# Publications

A preprint describing Palabos can be found here.

The following PhD theses, Master's thesis, and journal publication cite the use of Palabos in their research.

## Theses

[1] M. Ben Belgacem, **Distributed and multiscale computing for scientific applications**, University of Geneva, 2015.

[2] F. Brogi, **The lattice Boltzmann method for the study of volcano aeroacoustic source processes**, PhD Thesis, Université de Genève, 2017.

[3] S.-G. Cai, **Computational fluid-structure interaction with the moving immersed boundary method**, PhD Thesis, Université de Technologie de Compiègne, 2016.

[4] L. Chi, **Interpretation of Nuclear Magnetic Resonance Measurements in Formations with Complex Pore Structure**, PhD Thesis, 2015.

[5] W. Degruyter, **Investigating volcanic eruptions of silicic magmas using 3D textural analysis and computational fluid dynamics**, PhD Thesis, University of Geneva, 2010.

[6] G. Garapic, **Constraints on melt migration in the Earth’s upper mantle**, PhD Thesis, 2013.

[7] M. K. Ikeda, **A novel multiple-phase, multiple-component, thermal lattice Boltzmann model**, PhD Thesis, University of Pittsburgh, 2013.

[8] G. Izquierdo Bouldstridge, **Apprasial of flow simulation by the Lattice Boltzmann Method**, Master’s Thesis, Universitat Politècnica de Catalunya, 2017.

[9] A. A. Kanoria, **Lattice Boltzmann method for applied aerodynamics problems**, PhD Thesis, Indian Institute of Technology Gandhinagar, 2015.

[10] A. B. Krogvig, **Aeroacoustics in a flow pipe with a small, variable-length cavity**, Master’s Thesis, Institutt for elektronikk og telekommunikasjon, 2012.

[11] D. W. Lagrava Sandoval, **Revisiting grid refinement algorithms for the lattice Boltzmann method**, PhD Thesis, University of Geneva, 2012.

[12] C. J. Landry, **Pore-scale imaging and lattice Boltzmann modeling of single-and multi-phase flow in fractured and mixed-wet permeable media**, PhD Thesis, Pennsylvania State University, 2013.

[13] S. Li, **Continuum model for flow diverting stents of intracranial aneurysms**, PhD Thesis, Université de Genève, 2019.

[14] W. Lubowicz, **Influence of electrical effects on the deposition of aerosol particles in fibrous fileters**, PhD Thesis, Katedra Inżynierii Procesów Zintegrowanych, 2013.

[15] O. Malaspinas, **Lattice Boltzmann method for the simulation of viscoelastic fluid flows**, PhD Thesis, Ecole Polytechnique de Lausanne, Lausanne, Switzerland, 2009.

[16] R. Mandzhieva, **Introduction to digital core analysis: 3D reconstruction, numerical flow simulations and pore network modeling**, Master’s Thesis, NTNU, 2017.

[17] O. Marcou, **Modélisation et contrôle d’écoulements à surface libre par la méthode de Boltzmann sur réseau**, University of Geneva, 2010.

[18] X. Meyer, **Breaking computational barriers : application of computational science on high performance computers**, University of Geneva, 2016.

[19] J. A. S. Munoz, **Numerical Simulation of a Flag behind a Flat Plate in a Uniform Flow**, PhD Thesis, The University of Manchester, United Kingdom, 2019.

[20] M. Neveu, **Vérification de la méthode de Boltzmann sur réseau en vue de calculer la perméabilité de milieux poreux**, PhD Thesis, École Polytechnique de Montréal, 2017.

[21] J. N. Ortiz, **Computational Studies of the Effect of Nanofillers on Polymeric Matrices**, PhD Thesis, The Graduate School, Stony Brook University, Stony Brook, NY, 2015.

[22] A. Parmigiani, **Lattice Boltzmann calculations of reactive multiphase flows in porous media**, University of Geneva, 2011.

[23] J. Pellegrino, **Investigation of Factors that Control Droplet Formation in Microfluidic Cross-Junctions Using the Lattice Boltzmann Method**, PhD Thesis, The Graduate School, Stony Brook University, Stony Brook, NY, 2012.

[24] S. Perkins, **Field D* pathfinding in weighted simplicial complexes**, PhD Thesis, University of Cape Town, 2013.

[25] J. Prieto, G. Da Costa, A. Oleksiak, and M. Jarus, **CoolEmAll D5. 4 Energy and Heat-aware classification of application**, PhD Thesis, IRIT-Institut de recherche en informatique de Toulouse, 2013.

[26] C. Prohm, **Control of inertial microfluidics**, PhD Thesis, Technische Universität Berlin, 2014.

[27] J. Qi, **Efficient Lattice Boltzmann Simulations on Large Scale High Performance Computing Systems**, PhD Thesis, Universitätsbibliothek der RWTH Aachen, 2017.

[28] A. Shaaban, **Sound Generation By Flow Over Multiple Shallow Cavities**, PhD Thesis, 2018.

[29] S. Sohrabi, **Multiscale Modeling of Biological Flow using Lattice Boltzmann Method**, PhD Thesis, Lehigh University, 2017.

[30] M. Specklin, **On the assessment of immersed boundary methods for fluid-structure interaction modelling: application to waste water pumps design and the inherent clogging issues**, PhD Thesis, Dublin City University, 2018.

[31] N. Sun, **Application of Lattice Boltzmann Methods in Complex Mass Transfer Systems**, PhD Thesis, The Graduate School, Stony Brook University, Stony Brook, NY, 2016.

[32] A. O. Tokan-Lawal, **Understanding fluid flow in rough-walled fractures using x-ray microtomography images**, PhD Thesis, 2015.

[33] B. J. Tripp and others, **Dependence of transport properties on grain size distribution**, PhD Thesis, 2016.

[34] A. Zadehgol, **Introducing a new and entropic kinetic model for simulating incompressible viscous flows**, PhD Thesis, Isfahan University of Technology, 2015.

## Articles

[1] A. Abas, M. Abdullah, M. Ishak, N. As, and S. Khor, **Lattice Boltzmann and finite volume simulations of multiphase flow in BGA encapsulation process**, *J Eng Appl Sci*, vol. 10, no. 17, pp. 7354–60, 2015.

[2] A. Abas, Z. Gan, M. Ishak, M. Abdullah, and S. F. Khor, **Lattice Boltzmann method of different BGA orientations on I-type dispensing method**, *PloS one*, vol. 11, no. 7, p. e0159357, 2016.

[3] A. Abas, M. H. H. Ishak, M. Z. Abdullah, F. C. Ani, and S. F. Khor, **Lattice Boltzmann method study of bga bump arrangements on void formation**, *Microelectronics Reliability*, vol. 56, pp. 170–181, 2016.

[4] A. Abas, N. H. Mokhtar, M. H. H. Ishak, M. Z. Abdullah, and A. Ho Tian, **Lattice Boltzmann model of 3D multiphase flow in artery bifurcation aneurysm problem**, *Computational and mathematical methods in medicine*, vol. 2016, 2016.

[5] A. Abas, Z. Gan, M. Ishak, N. Nasip, and S. Khor, **Lattice Boltzmann Study of Vortex Street in Pressurized Underfill Manufacturing Process**, *Journal of Industrial Engineering Research*, vol. 1, no. 10, pp. 30–36, 2015.

[6] A. M. Afonso, **Numerical Simulations of Complex Fluid-Flows at Microscale**, in *Complex Fluid-Flows in Microfluidics*, Springer, 2018, pp. 73–94.

[7] Z. Ahmad, R. Singh, S. S. Bahga, and A. Gupta, **Droplet Formation in a T-Junction Microfluidic Device in the Presence of an Electric Field**, in *ASME 2015 13th International Conference on Nanochannels, Microchannels, and Minichannels*, San Francisco, California, USA, 2015, p. V001T04A005.

[8] K. Aliakbar, R. M. Reza, V. Ali, S. S. Behnam, and M. Hamed, **Investigating the pore-level heterogeneity pattern on non-Darcy flow using lattice Boltzmann method simulation**, *Journal of Porous Media*, vol. 21, no. 8, 2018.

[9] S. Alowayyed *et al.*, **Patterns for high performance multiscale computing**, *Future Generation Computer Systems*, vol. 91, pp. 335–346, 2019.

[10] S. Alowayyed, D. Groen, P. V. Coveney, and A. G. Hoekstra, **Multiscale computing in the exascale era**, *Journal of Computational Science*, vol. 22, pp. 15–25, 2017.

[11] S. Alowayyed, G. Závodszky, V. Azizi, and A. G. Hoekstra, **Load balancing of parallel cell-based blood flow simulations**, *Journal of computational science*, vol. 24, pp. 1–7, 2018.

[12] M. Amielh *et al.*, **Aeroacoustic source analysis in a corrugated flow pipe using low-frequency mitigation**, *Journal of Turbulence*, vol. 15, no. 10, pp. 650–676, 2014.

[13] S. Anbar, K. E. Thompson, and M. Tyagi, **The Impact of Compaction and Sand Migration on Permeability and Non-Darcy Coefficient from Pore-Scale Simulations**, *Transport in Porous Media*, vol. 127, no. 2, pp. 247–267, 2019.

[14] M. Andersson, H. Paradis, J. Yuan, and B. Sundén, **3D Modeling of an Anode Supported SOFC Using FEM and LBM**, in *ASME 2013 11th International Conference on Fuel Cell Science, Engineering and Technology collocated with the ASME 2013 Heat Transfer Summer Conference and the ASME 2013 7th International Conference on Energy Sustainability*, 2013, p. V001T02A001–V001T02A001.

[15] A. Anissofira and F. D. Latief, **Permeability estimation of crack type and granular type of pore space in a geothermal reservoir using lattice boltzmann method and Kozeny-Carman relation**, in *Proceedings World Geothermal Congress 2015, Melbourne*, 2015.

[16] H. Anzai, B. Chopard, and M. Ohta, **Combinational optimization of strut placement for intracranial stent using a realistic aneurysm**, *Journal of Flow Control, Measurement & Visualization*, vol. 2, no. 02, p. 67, 2014.

[17] H. Anzai, J.-L. Falcone, B. Chopard, T. Hayase, and M. Ohta, **Optimization of strut placement in flow diverter stents for four different aneurysm configurations**, *Journal of biomechanical engineering*, vol. 136, no. 6, p. 061006, 2014.

[18] H. Anzai, M. Ohta, J.-L. Falcone, and B. Chopard, **Optimization of flow diverters for cerebral aneurysms**, *Journal of Computational Science*, vol. 3, no. 1–2, pp. 1–7, 2012.

[19] R. Archer, **An Exploration of Porosity-permeability Relationships in 3D Fracture Network Using the Lattice-Boltzmann Method**, in *ECMOR XIV-14th European Conference on the Mathematics of Oil Recovery*, 2014.

[20] R. Askari, M. Ikram, and S. Hejazi, **Pore scale evaluation of thermal conduction anisotropy in granular porous media using Lattice Boltzmann method**, *International Journal of Numerical Methods for Heat & Fluid Flow*, vol. 27, no. 4, pp. 867–888, 2017.

[21] A. Avramenko, Y. Y. Kovetska, I. Shevchuk, A. Tyrinov, and V. Shevchuk, **Mixed Convection in Vertical Flat and Circular Porous Microchannels**, *Transport in Porous Media*, vol. 124, no. 3, pp. 919–941, 2018.

[22] A. A. Avramenko, I. V. Shevchuk, and A. V. Kravchuk, **Turbulent incompressible microflow between rotating parallel plates**, *European Journal of Mechanics-B/Fluids*, vol. 71, pp. 35–46, 2018.

[23] V. Balashov, **Direct Simulation of Moderately Rarefied Gas Flows in Two-Dimensional Model Porous Media**, *Mathematical Models and Computer Simulations*, vol. 10, no. 4, pp. 483–493, 2018.

[24] V. Balashov and E. Savenkov, **Direct pore-scale flow simulation using quasi-hydrodynamic equations**, in *Doklady Physics*, 2016, vol. 61, pp. 192–194.

[25] V. Balashov, E. Savenkov, and A. Kuleshov, **Direct numerical simulation of a fluid flow in core samples based on quasi-hydrodynamic equations**, vol. 1790. AIP Publishing, 2016.

[26] V. Balashov and E. Savenkov, **Direct Numerical Simulation of Single and Two-Phase Flows at Pore-Scale**, in *Physical and Mathematical Modeling of Earth and Environment Processes (2018)*, Springer, 2019, pp. 374–379.

[27] M. B. Belgacem and B. Chopard, **A hybrid HPC/cloud distributed infrastructure: Coupling EC2 cloud resources with HPC clusters to run large tightly coupled multiscale applications**, *Future Generation Computer Systems*, vol. 42, pp. 11–21, 2015.

[28] M. B. Belgacem and B. Chopard, **MUSCLE-HPC: a new high performance API to couple multiscale parallel applications**, *Future Generation Computer Systems*, vol. 67, pp. 72–82, 2017.

[29] M. B. Belgacem, B. Chopard, J. Borgdorff, M. Mamoński, K. Rycerz, and D. Harezlak, **Distributed multiscale computations using the MAPPER framework**, *Procedia Computer Science*, vol. 18, pp. 1106–1115, 2013.

[30] M. B. Belgacem, B. Chopard, J. Latt, and A. Parmigiani, **A Framework for Building a Network of Irrigation Canals On a Distributed Computing Environment: A Case Study.**, *Journal of Cellular Automata*, vol. 9, 2014.

[31] M. B. Belgacem, B. Chopard, J. Latt, and A. Parmigiani, **A Framework for Building a Network of Irrigation Canals On a Distributed Computing Environment: A Case Study.**, *Journal of Cellular Automata*, vol. 9, 2014.

[32] M. B. Belgacem, B. Chopard, and A. Parmigiani, **Coupling method for building a network of irrigation canals on a distributed computing environment**, in *International Conference on Cellular Automata*, 2012, pp. 309–318.

[33] J. Beny and J. Latt, **Efficient LBM on GPUs for dense moving objects using immersed boundary condition**, in *CILAMCE 2018 Proceedings of XXXIX Ibero-Latin American Congress on Computational Methods in Engineering*, 2018.

[34] P. Berghout and H. E. Van den Akker, **Simulating drop formation at an aperture by means of a Multi-Component Pseudo-Potential Lattice Boltzmann model**, *International Journal of Heat and Fluid Flow*, vol. 75, pp. 153–164, 2019.

[35] M. Bhamjee, S. Connell, and A. L. Nel, **An investigation into the applicability of the Lattice Boltzmann method to modelling of the flow in a hydrocyclone**, 2014.

[36] J. Bielecki *et al.*, **Preliminary Investigations of Elemental Content, Microporosity, and Specific Surface Area of Porous Rocks Using PIXE and X-ray Microtomography Techniques.**, *Acta Physica Polonica, A.*, vol. 121, no. 2, 2012.

[37] J. Bielecki, J. Jarzyna, S. Bożek, J. Lekki, Z. Stachura, and W. Kwiatek, **Computed microtomography and numerical study of porous rock samples**, *Radiation Physics and Chemistry*, vol. 93, pp. 59–66, 2013.

[38] J. Borgdorff *et al.*, **A distributed multiscale computation of a tightly coupled model using the multiscale modeling language**, *Procedia Computer Science*, vol. 9, pp. 596–605, 2012.

[39] J. Borgdorff, J.-L. Falcone, E. Lorenz, C. Bona-Casas, B. Chopard, and A. G. Hoekstra, **Foundations of distributed multiscale computing: Formalization, specification, and analysis**, *Journal of Parallel and Distributed Computing*, vol. 73, no. 4, pp. 465–483, 2013.

[40] J. Borgdorff *et al.*, **Distributed multiscale computing with MUSCLE 2, the multiscale coupling library and environment**, *Journal of Computational Science*, vol. 5, no. 5, pp. 719–731, 2014.

[41] A. T. Borujeni, **Effects of Variations of Stress-Dependent Hydraulic Properties of Proppant Packs on the Productivity Indices of the Hydraulically Fractured Shale Gas Reservoirs**, in *Unconventional Resources Technology Conference, Denver, Colorado, 25-27 August 2014*, 2014, pp. 1675–1683.

[42] A. T. Borujeni, N. Lane, K. Thompson, and M. Tyagi, **Effects of image resolution and numerical resolution on computed permeability of consolidated packing using LB and FEM pore-scale simulations**, *Computers & Fluids*, vol. 88, pp. 753–763, 2013.

[43] V. Boyd *et al.*, **Influence of Mg2+ on CaCO3 precipitation during subsurface reactive transport in a homogeneous silicon-etched pore network**, *Geochimica et Cosmochimica Acta*, vol. 135, pp. 321–335, 2014.

[44] F. Brogi *et al.*, **Development and validation of a 3D Lattice Boltzmann model for volcano aeroacoustics**, in *EGU General Assembly Conference Abstracts*, 2015, vol. 17.

[45] F. Brogi, O. Malaspinas, B. Chopard, and C. Bondadonna, **Hermite regularization of the lattice Boltzmann method for open source computational aeroacoustics**, *The Journal of the Acoustical Society of America*, vol. 142, no. 4, pp. 2332–2345, 2017.

[46] V. N. Burganos, E. D. Skouras, and A. N. Kalarakis, **An integrated simulator of structure and anisotropic flow in gas diffusion layers with hydrophobic additives**, *Journal of Power Sources*, vol. 365, pp. 179–189, 2017.

[47] A. Burgisser, L. Chevalier, J. E. Gardner, and J. M. Castro, **The percolation threshold and permeability evolution of ascending magmas**, *Earth and Planetary Science Letters*, vol. 470, pp. 37–47, 2017.

[48] C. Chantrapornchai and P. Uthayopas, **A road to student cluster competition for Thailand**, in *2016 13th International Joint Conference on Computer Science and Software Engineering (JCSSE)*, 2016, pp. 1–6.

[49] M. Chaparro and M. Saaltink, **REACTIVE TRANSPORT AND TRITIUM TRANSPORT MODELS IN CONCRETE CELLS FOR STORING RADIOACTIVE WASTE**, *Mechanisms and Modelling of Waste*, vol. 83, p. 19, 2017.

[50] B. Chareyre, C. Yuan, E. P. Montella, and S. Salager, **Toward multiscale modelings of grain-fluid systems**, in *EPJ Web of Conferences*, 2017, vol. 140, p. 09027.

[51] R. Chassagne, F. Dörfler, and M. Guyenot, **Modeling of the HPC infiltration process by means of the lattice Boltzmann method**, in *2016 17th International Conference on Thermal, Mechanical and Multi-Physics Simulation and Experiments in Microelectronics and Microsystems (EuroSimE)*, 2016, pp. 1–4.

[52] R. Chassagne, F. Dörfler, M. Guyenot, and J. Harting, **Modeling of capillary-driven flows in axisymmetric geometries**, *Computers & Fluids*, vol. 178, pp. 132–140, 2019.

[53] H. Chen and Z. Chen, **Lattice Boltzmann modeling of two-phase flows in complex porous media considering surface hydrophobicity**, *Applied Mechanics and Civil Engineering VI*, p. 167, 2017.

[54] L. Chen, H. Cui, and L. Wang, **Modified ghost fluid method on LBM with reduced spurious pressure oscillations for moving boundaries**, *International Journal of Modern Physics C*, vol. 28, no. 04, p. 1750056, 2017.

[55] L. Chen, Y. Yu, and G. Hou, **Sharp-interface immersed boundary lattice Boltzmann method with reduced spurious-pressure oscillations for moving boundaries**, *Physical Review E*, vol. 87, no. 5, p. 053306, 2013.

[56] L. Chen, H. Zhu, and H. Cui, **A study of the Brownian motion of the non-spherical microparticles on fluctuating lattice Boltzmann method**, *Microfluidics and Nanofluidics*, vol. 21, no. 3, p. 54, 2017.

[57] X.-P. Chen, **Applications of lattice Boltzmann method to turbulent flow around two-dimensional airfoil**, *Engineering Applications of Computational Fluid Mechanics*, vol. 6, no. 4, pp. 572–580, 2012.

[58] X. Chen, R. Verma, D. N. Espinoza, and M. Prodanović, **Pore-Scale Determination of Gas Relative Permeability in Hydrate-Bearing Sediments Using X-Ray Computed Micro-Tomography and Lattice Boltzmann Method**, *Water Resources Research*, vol. 54, no. 1, pp. 600–608, 2018.

[59] L. Cheng, G. Rong, J. Yang, and C. Zhou, **Fluid flow through single fractures with directional shear dislocations**, *Transport in Porous Media*, vol. 118, no. 2, pp. 301–326, 2017.

[60] L. Chi and Z. Heidari, **Impact of Fracture-Pore Diffusional Coupling on NMR-based Permeability Assessment**, in *SPWLA 56th Annual Logging Symposium*, 2015.

[61] L. Chi and Z. Heidari, **Directional-Permeability Assessment in Formations With Complex Pore Geometry With a New Nuclear-Magnetic-Resonance-Based Permeability Model**, *SPE Journal*, vol. 21, no. 04, pp. 1–436, 2016.

[62] L. Chi, Z. Heidari, and others, **Directional permeability assessment in formations with complex pore geometry using a new NMR-based permeability model**, in *SPWLA 55th Annual Logging Symposium*, 2014.

[63] B. Chopard *et al.*, **A lattice Boltzmann modeling of bloodflow in cerebral aneurysms**, in *V Eur Conf Comput Fluid Dyn ECCOMAS CFD*, 2010, vol. 453, p. 12.

[64] B. Chopard *et al.*, **A lattice Boltzmann modeling of bloodflow in cerebral aneurysms**, in *V Eur Conf Comput Fluid Dyn ECCOMAS CFD*, 2010, vol. 453, p. 12.

[65] G. Coelho, Y. Branquet, S. Sizaret, L. Arbaret, R. Champallier, and O. Rozenbaum, **Permeability of sheeted dykes beneath oceanic ridges: Strain experiments coupled with 3D numerical modeling of the Troodos Ophiolite, Cyprus**, *Tectonophysics*, vol. 644, pp. 138–150, 2015.

[66] G. Courbebaisse, J. Latt, O. Malaspinas, M. Orkirz, and B. Chopard, **Blood flow simulation within Stented Intracranial Aneurysm**, in *Ninth International Conference on Flow Dynamics (ICFD) 2012*, 2012.

[67] T. A. Cousins, B. Ghanbarian, and H. Daigle, **Three-Dimensional Lattice Boltzmann Simulations of Single-Phase Permeability in Random Fractal Porous Media with Rough Pore–Solid Interface**, *Transport in Porous Media*, vol. 122, no. 3, pp. 527–546, 2018.

[68] A. Cubeddu, C. Rauh, and V. Ulrich, **Simulations of bubble growth and interaction in high viscous fluids using the lattice Boltzmann method**, *International Journal of Multiphase Flow*, vol. 93, pp. 108–114, 2017.

[69] H. Daigle and J. S. Reece, **Permeability of two-component granular materials**, *Transport in Porous Media*, vol. 106, no. 3, pp. 523–544, 2015.

[70] M. de Haan, G. Zavodszky, V. Azizi, and A. Hoekstra, **Numerical investigation of the effects of red blood cell cytoplasmic viscosity contrasts on single cell and bulk transport behaviour**, *Applied Sciences*, vol. 8, no. 9, p. 1616, 2018.

[71] W. Degruyter, A. Burgisser, O. Bachmann, and O. Malaspinas, **Synchrotron X-ray microtomography and lattice Boltzmann simulations of gas flow through volcanic pumices**, *Geosphere*, vol. 6, no. 5, pp. 470–481, 2010.

[72] W. Degruyter, A. Parmigiani, C. Huber, and O. Bachmann, **How do volatiles escape their shallow magmatic hearth?**, *Philosophical Transactions of the Royal Society A*, vol. 377, no. 2139, p. 20180017, 2019.

[73] P. R. Di Palma, N. Guyennon, A. Parmigiani, C. Huber, F. Heβe, and E. Romano, **Impact of Synthetic Porous Medium Geometric Properties on Solute Transport Using Direct 3D Pore-Scale Simulations**, *Geofluids*, vol. 2019, 2019.

[74] P. Di Palma, N. Guyennon, F. He\s se, and E. Romano, **Porous media flux sensitivity to pore-scale geostatistics: A bottom-up approach**, *Advances in water resources*, vol. 102, pp. 99–110, 2017.

[75] W.-T. Ding and W.-J. Xu, **Study on the multiphase fluid-solid interaction in granular materials based on an LBM-DEM coupled method**, *Powder technology*, vol. 335, pp. 301–314, 2018.

[76] F. Dolamore, C. Fee, and S. Dimartino, **Modelling ordered packed beds of spheres: The importance of bed orientation and the influence of tortuosity on dispersion**, *Journal of Chromatography A*, vol. 1532, pp. 150–160, 2018.

[77] J. Domitner *et al.*, **3D simulation of interdendritic flow through a Al-18wt.% Cu structure captured with X-ray microtomography**, in *IOP Conference Series: Materials Science and Engineering*, 2012, vol. 27, p. 012016.

[78] Y. Du, **Scaling applications from six application domains on Tianhe-2**, *WELCOME TO EEMD 2015*, p. 35, 2015.

[79] A. Duda, Z. Koza, and M. Matyka, **Hydraulic tortuosity in arbitrary porous media flow**, *Physical Review E*, vol. 84, no. 3, p. 036319, 2011.

[80] El Hannach Mohamed and E. Kjeang, **Stochastic microstructural modeling of PEFC gas diffusion media**, *Journal of The Electrochemical Society*, vol. 161, no. 9, pp. F951–F960, 2014.

[81] L. Flórez-Valencia *et al.*, **Virtual deployment of pipeline flow diverters in cerebral vessels with aneurysms to understand thrombosis**, in *MICCAI-STENT’12 The 1st International MICCAI-Workshop on Computer Assisted Stenting*, 2012, p. 49.

[82] D. Froning, J. Brinkmann, U. Reimer, V. Schmidt, W. Lehnert, and D. Stolten, **3D analysis, modeling and simulation of transport processes in compressed fibrous microstructures, using the Lattice Boltzmann method**, *Electrochimica Acta*, vol. 110, pp. 325–334, Nov. 2013.

[83] D. Froning *et al.*, **Impact of compression on gas transport in non-woven gas diffusion layers of high temperature polymer electrolyte fuel cells**, *Journal of Power Sources*, vol. 318, pp. 26–34, 2016.

[84] Y. Fu, F. Li, F. Song, and L. Zhu, **Designing a Parallel Memory-Aware Lattice Boltzmann Algorithm on Manycore Systems**, in *2018 30th International Symposium on Computer Architecture and High Performance Computing (SBAC-PAD)*, 2018, pp. 97–106.

[85] G. Galeron, D. Mazzoni, M. Amielh, P. O. Mattei, and F. Anselmet, **Experimental and numerical investigations of the aeroacoustics in a corrugated pipe flow**, in *Turbulence and Interactions*, 2015, pp. 149–156.

[86] G. Garapic and U. Faul, **Permeability of Partially Molten Rocks from Lattice-Boltzmann Modeling**, in *AGU Fall Meeting Abstracts*, 2013.

[87] P. A. García-Salaberri, J. T. Gostick, G. Hwang, A. Z. Weber, and M. Vera, **Effective diffusivity in partially-saturated carbon-fiber gas diffusion layers: Effect of local saturation and application to macroscopic continuum models**, *Journal of Power Sources*, vol. 296, pp. 440–453, 2015.

[88] P. A. García-Salaberri, J. T. Gostick, I. V. Zenyuk, G. Hwang, M. Vera, and A. Z. Weber, **On the limitations of volume-averaged descriptions of gas diffusion layers in the modeling of polymer electrolyte fuel cells**, *ECS Transactions*, vol. 80, no. 8, pp. 133–143, 2017.

[89] P. A. García-Salaberri *et al.*, **Analysis of representative elementary volume and through-plane regional characteristics of carbon-fiber papers: diffusivity, permeability and electrical/thermal conductivity**, *International Journal of Heat and Mass Transfer*, vol. 127, pp. 687–703, 2018.

[90] S. Geiger, K. S. Schmid, and Y. Zaretskiy, **Mathematical analysis and numerical simulation of multi-phase multi-component flow in heterogeneous porous media**, *Current Opinion in Colloid & Interface Science*, vol. 17, no. 3, pp. 147–155, 2012.

[91] B. Ghanbarian and H. Daigle, **Permeability in two-component porous media: Effective-medium approximation compared with lattice-Boltzmann simulations**, *Vadose Zone Journal*, vol. 15, no. 2, 2016.

[92] S. Ghanbarzadeh, M. Hesse, M. Prodanovic, and J. Gardner, **Effect of Dihedral Angle and Porosity on Percolating-Sealing Capacity of Texturally Equilibrated Rock Salt**, in *AGU Fall Meeting Abstracts*, 2013.

[93] R. Giro, P. W. Bryant, M. B. Steiner, R. R. Del Grande, C. F. Feger, and M. Engel, **Multi-scale modeling of wetting: effects of surface roughness**, in *Iberian Latin American congress on computational methods in engineering*, 2014.

[94] P. Gniewek and O. Hallatschek, **Fluid flow through packings of elastic shells**, *Physical Review E*, vol. 99, no. 2, p. 023103, 2019.

[95] R. Gomila, G. Arancibia, D. Mery, M. Nehler, R. Bracke, and D. Morata, **Palaeopermeability anisotropy and geometrical properties of sealed-microfractures from micro-CT analyses: An open-source implementation**, *Micron*, vol. 117, pp. 29–39, 2019.

[96] J. T. Gostick, P. A. García-Salaberri, G. Hwang, M. Vera, and A. Z. Weber, **On the Mass-Transfer Properties of Partially-Saturated Carbon-Paper Gas Diffusion Layers: Global Vs. Local Effective Diffusivity**, in *Meeting Abstracts*, 2015, pp. 74–74.

[97] N. Gourdain, T. Jardin, R. Serre, S. Prothin, and J.-M. Moschetta, **Application of a lattice Boltzmann method to some challenges related to micro-air vehicles**, *International Journal of Micro Air Vehicles*, vol. 10, no. 3, pp. 285–299, 2018.

[98] N. Gourdain, D. Singh, T. Jardin, and S. Prothin, **Analysis of the turbulent wake generated by a micro air vehicle hovering near the ground with a lattice boltzmann method**, *Journal of the American Helicopter Society*, vol. 62, no. 4, pp. 1–12, 2017.

[99] D. Groen *et al.*, **Flexible composition and execution of high performance, high fidelity multiscale biomedical simulations**, *Interface Focus*, vol. 3, no. 2, p. 20120087, 2013.

[100] D. Groen, J. Hetherington, H. B. Carver, R. W. Nash, M. O. Bernabeu, and P. V. Coveney, **Analysing and modelling the performance of the HemeLB lattice-Boltzmann simulation environment**, *Journal of Computational Science*, vol. 4, no. 5, pp. 412–422, 2013.

[101] D. Hamane, O. Guerri, and S. Larbi, **Investigation of flow around a circular cylinder in laminar and turbulent flow using the Lattice Boltzmann method**, in *AIP Conference Proceedings*, 2015, vol. 1648, p. 850094.

[102] M. Hasert *et al.*, **Complex fluid simulations with the parallel tree-based Lattice Boltzmann solver Musubi**, *Journal of Computational Science*, vol. 5, no. 5, pp. 784–794, 2014.

[103] A. G. Hoekstra, B. Chopard, D. Coster, S. Portegies Zwart, and P. V. Coveney, **Multiscale computing for science and engineering in the era of exascale performance**, *Philosophical Transactions of the Royal Society A*, vol. 377, no. 2142, p. 20180144, 2019.

[104] J. Hofmann, **MSc Thesis: Heterogeneous Multiscale Simulations of Blood Flow**, 2013.

[105] X. Huang *et al.*, **Morphology and transport properties of fibrous porous media**, *Powder technology*, vol. 283, pp. 618–626, 2015.

[106] C. Huber, A. Parmigiani, J. Latt, and J. Dufek, **Channelization of buoyant nonwetting fluids in saturated porous media**, *Water Resources Research*, vol. 49, no. 10, pp. 6371–6380, 2013.

[107] C. Huber, A. Parmigiani, J. Latt, and J. Dufek, **Channelization of buoyant nonwetting fluids in saturated porous media**, *Water Resources Research*, vol. 49, no. 10, pp. 6371–6380, 2013.

[108] C. Huber and Y. Su, **A pore-scale investigation of the dynamic response of saturated porous media to transient stresses**, *Geofluids*, vol. 15, no. 1–2, pp. 11–23, 2015.

[109] M. F. Ikram, R. Askari, S. H. Hejazi, and M. Sahimi, **Effect of Elastic Deformation and Rough Grain Surface on Heat Conduction in Partially Saturated Granular Porous Media**, *Water Resources Research*, vol. 54, no. 11, pp. 9533–9548, 2018.

[110] Z. Irayani, U. Fauzi, S. Viridi, and F. D. E. Latief, **Calculation of anisotropy permeability from 3D tomographic images using renormalization group approaches and lattice Boltzmann method**, *Journal of Petroleum Exploration and Production Technology*, pp. 1–9, 2018.

[111] Z. Irayani, U. Fauzi, and F. D. E. Latief, **Permeability anisotropy of layering rock model**, in *AIP Conference Proceedings*, 2015, vol. 1656, p. 060004.

[112] M. Ishak, M. Abdullah, A. Abas, M. Ismail, and M. Mohamad, **Simulation of Non-Newtnonian Fluid Flow Through Encapsulation of 3-Dimensional Stacked Flip-Chip Package Using Lattice Boltzmann Method**, in *International Conference on Engineering of Tarumanagara (ICET 2015)*, 2015, pp. 22–23.

[113] M. H. H. Ishak, M. Z. Abdullah, and A. Abas, **Lattice Boltzmann method study of effect three dimensional stacking-chip package layout on micro-void formation during encapsulation process**, *Microelectronics Reliability*, vol. 65, pp. 205–216, 2016.

[114] A. Islam, T. Faisal, S. Chevalier, M. Jouini, M. Jouiad, and M. Sassi, **3D Flow Simulation Using Lattice Boltzmann Method on Real Carbonate Core-Plug Samples**, in *AGU Fall Meeting Abstracts*, 2014.

[115] A. Islam, S. Chevalier, and M. Sassi, **Structural characterization and numerical simulations of flow properties of standard and reservoir carbonate rocks using micro-tomography**, *Computers & Geosciences*, vol. 113, pp. 14–22, 2018.

[116] M. A. Itani *et al.*, **An automated multiscale ensemble simulation approach for vascular blood flow**, *Journal of computational science*, vol. 9, pp. 150–155, 2015.

[117] Y. Jin, M. F. Uth, and H. Herwig, **Structure of a turbulent flow through plane channels with smooth and rough walls: An analysis based on high resolution DNS results**, *Computers & Fluids*, vol. 107, pp. 77 – 88, 2015.

[118] Y. Jin, X. Liu, Z. Liu, S. Lu, and Q. Xue, **Effect of interfacial layer on water flow in nanochannels: Lattice Boltzmann simulations**, *Physica B: Condensed Matter*, vol. 487, pp. 18–24, 2016.

[119] Y. Jin, Q. Xue, D. He, X. Liu, and S. Lu, **Quantitative Characterization of the Effect of Interfacial Fluid Layer on Water Flow Inside Nano-Porous Medium Using the Lattice Boltzmann Method**, *Journal of Nanoscience and Nanotechnology*, vol. 17, no. 9, pp. 6216–6223, 2017.

[120] Y. Ju, J. Wang, F. Gao, and H. Xie, **Lattice-Boltzmann simulation of microscale CH 4 flow in porous rock subject to force-induced deformation**, *Chinese science bulletin*, vol. 59, no. 26, pp. 3292–3303, 2014.

[121] H. Jung and C. Meile, **Upscaling of microbially driven first-order reactions in heterogeneous porous media**, *Journal of contaminant hydrology*, 2019.

[122] A. Kakouei, A. Vatani, M. Rasaei, B. S. Sola, and H. Moqtaderi, **Cessation of Darcy regime in gas flow through porous media using LBM: comparison of pressure gradient approaches**, *Journal of Natural Gas Science and Engineering*, vol. 45, pp. 693–705, 2017.

[123] Z. A. Khan, T. Tranter, M. Agnaou, A. Elkamel, and J. Gostick, **Dual network extraction algorithm to investigate multiple transport processes in porous materials: Image-based modeling of pore and grain scale processes**, *Computers & Chemical Engineering*, vol. 123, pp. 64–77, 2019.

[124] S. M. Khatoonabadi and M. Ashrafizaadeh, **Simulation of droplet impact on a thin liquid film using the pseudopotential multiphase model**, *Modares Mechanical Engineering*, vol. 16, no. 3, pp. 8–16, 2016.

[125] S. Kobel, A. Valero, J. Latt, P. Renaud, and M. Lutolf, **Optimization of microfluidic single cell trapping for long-term on-chip culture**, *Lab on a Chip*, vol. 10, no. 7, pp. 857–863, 2010.

[126] M. D. Kok, R. Jervis, D. Brett, P. R. Shearing, and J. T. Gostick, **Insights into the Effect of Structural Heterogeneity in Carbonized Electrospun Fibrous Mats for Flow Battery Electrodes by X-Ray Tomography**, *Small*, vol. 14, no. 9, p. 1703616, 2018.

[127] M. D. Kok, R. Jervis, P. R. Shearing, and J. T. Gostick, **Fluid transport properties from 3D tomographic images of electrospun carbon electrodes for flow batteries**, *ECS Transactions*, vol. 77, no. 11, pp. 129–143, 2017.

[128] P. Kopta *et al.*, **Parallel application benchmarks and performance evaluation of the Intel Xeon 7500 family processors**, *Procedia Computer Science*, vol. 4, pp. 372–381, 2011.

[129] A. Krämer, D. Wilde, K. Küllmer, D. Reith, H. Foysi, and W. Joppich, **Lattice Boltzmann simulations on irregular grids: Introduction of the NATriuM library**, *Computers & Mathematics with Applications*, 2018.

[130] U. Kristiansen, D. Mazzoni, and A. B. Krogvig, **Aeroacoustic investigation of a flow pipe with a small cavity using the lattice Boltzmann method.**, in *35th Scandinavian Symposium on Physical Acoustics*, 2012.

[131] M. Kulczewski, K. Kurowski, M. Kierzynka, M. Dohnalik, J. Kaczmarczyk, and A. T. Borujeni, **Modern hardware architectures accelerate porous media flow computations**, in *AIP Conference Proceedings 4*, 2012, vol. 1453, pp. 161–166.

[132] K. Küllmer, A. Krämer, D. Reith, W. Joppich, and H. Foysi, **Numerical optimisation of the pseudopotential-based lattice Boltzmann method**, *Journal of Computational Science*, vol. 17, pp. 384–393, 2016.

[133] K. Kurowski, M. Kulczewski, and M. Dobski, **Parallel and GPU based strategies for selected CFD and climate modeling models**, in *Information Technologies in Environmental Engineering*, Springer, 2011, pp. 735–747.

[134] D. Lagrava, O. Malaspinas, J. Latt, and B. Chopard, **Advances in multi-domain lattice Boltzmann grid refinement**, *Journal of Computational Physics*, vol. 231, no. 14, pp. 4808–4822, 2012.

[135] D. Lagrava, O. Malaspinas, J. Latt, and B. Chopard, **Advances in multi-domain lattice Boltzmann grid refinement**, *Journal of Computational Physics*, vol. 231, no. 14, pp. 4808–4822, 2012.

[136] C. J. Landry and Z. T. Karpyn, **Single-phase lattice Boltzmann simulations of pore-scale flow in fractured permeable media**, *International Journal of Oil, Gas and Coal Technology*, vol. 5, no. 2–3, pp. 182–206, 2012.

[137] C. Landry, Z. Karpyn, and O. Ayala, **Pore-scale lattice Boltzmann modeling and 4D X-ray computed microtomography imaging of fracture-matrix fluid transfer**, *Transport in porous media*, vol. 103, no. 3, pp. 449–468, 2014.

[138] C. Landry, Z. Karpyn, and O. Ayala, **Relative permeability of homogenous-wet and mixed-wet porous media as determined by pore-scale lattice Boltzmann modeling**, *Water Resources Research*, vol. 50, no. 5, pp. 3672–3689, 2014.

[139] F. Latief, Z. Irayani, and U. Fauzi, **Resolution dependency of sandstone’s physical properties**, in *Annual μCT User Meeting, Belgium*, 2012.

[140] F. Latief, Z. Irayani, and U. Fauzi, **Modeling and characterization of laminated granular rocks**, in *AIP Conference Proceedings*, 2012, vol. 1454, pp. 117–120.

[141] F. D. E. Latief, **Identification and isolation of closed pore in porous rock using digital rock physics approach**, in *AIP Conference Proceedings*, 2015, vol. 1677, p. 060012.

[142] F. D. E. Latief and T. M. Haq, **Digital characterization and preliminary computer modeling of hydrocarbon bearing sandstone**, in *AIP Conference Proceedings*, 2014, vol. 1589, pp. 112–115.

[143] F. D. E. Latief, Z. Irayani, and U. Fauzi, **Flow properties of the experimental and computer models of laminated rock**, in *AIP Conference Proceedings*, 2015, vol. 1656, p. 070001.

[144] J. Latt and B. Chopard, **A benchmark case for lattice Boltzmann: turbulent dipole-wall collision**, *International Journal of Modern Physics C*, vol. 18, no. 04, pp. 619–626, 2007.

[145] J. Latt, D. Kontaxakis, L. Chatagny, F. Muggli, and B. Chopard, **Hybrid Lattice Boltzmann Method for the Simulation of Blending Process in Static Mixers**, *International Journal of Modern Physics C*, vol. 24, no. 12, p. 1340009, 2013.

[146] J. Latt, D. Kontaxakis, L. Chatagny, F. Muggli, and B. Chopard, **Hybrid Lattice Boltzmann Method for the Simulation of Blending Process in Static Mixers**, *International Journal of Modern Physics C*, vol. 24, no. 12, p. 1340009, 2013.

[147] S. Leclaire, J. Latt, D. Vidal, and F. Bertrand, **Multiphase periodic pressure difference boundary condition enhanced by a proportional-integral-derivative controller for the lattice Boltzmann method**, *International Journal for Numerical Methods in Fluids*, vol. 88, no. 9, pp. 434–446, 2018.

[148] S. Leclaire, J. Latt, D. Vidal, and F. Bertrand, **Multiphase periodic pressure difference boundary condition enhanced by a proportional-integral-derivative controller for the lattice Boltzmann method**, *International Journal for Numerical Methods in Fluids*, vol. 88, no. 9, pp. 434–446, 2018.

[149] S. Leclaire, A. Parmigiani, B. Chopard, and J. Latt, **Three-dimensional lattice Boltzmann method benchmarks between color-gradient and pseudo-potential immiscible multi-component models**, *International Journal of Modern Physics C*, vol. 28, no. 07, p. 1750085, 2017.

[150] S. Leclaire, A. Parmigiani, B. Chopard, and J. Latt, **Three-dimensional lattice Boltzmann method benchmarks between color-gradient and pseudo-potential immiscible multi-component models**, *Int. J. Mod. Phys. C*, vol. 28, no. 07, p. 1750085, May 2017.

[151] S. Leclaire, A. Parmigiani, O. Malaspinas, B. Chopard, and J. Latt, **Generalized three-dimensional lattice Boltzmann color-gradient method for immiscible two-phase pore-scale imbibition and drainage in porous media**, *Physical Review E*, vol. 95, no. 3, p. 033306, 2017.

[152] S. Leclaire, A. Parmigiani, O. Malaspinas, B. Chopard, and J. Latt, **Generalized three-dimensional lattice Boltzmann color-gradient method for immiscible two-phase pore-scale imbibition and drainage in porous media**, *Phys. Rev. E*, vol. 95, no. 3, p. 033306, Mar. 2017.

[153] J. Lee, N. Kohl, S. Shanbhang, and B. Parekkadan, **Scaffold-integrated microchips for end-to-end in vitro tumor cell attachment and xenograft formation**, *Technology*, vol. 3, no. 4, pp. 179–188, Dec. 2015.

[154] D. Li *et al.*, **Parallelizing and optimizing large-scale 3D multi-phase flow simulations on the Tianhe-2 supercomputer**, *Concurrency and Computation: Practice and Experience*, vol. 28, no. 5, pp. 1678–1692, 2016.

[155] Q. Li, Q. Kang, M. M. Francois, Y. He, and K. Luo, **Lattice Boltzmann modeling of boiling heat transfer: the boiling curve and the effects of wettability**, *International Journal of Heat and Mass Transfer*, vol. 85, pp. 787–796, 2015.

[156] S. Li, J. Latt, and B. Chopard, **Model for pressure drop and flow deflection in the numerical simulation of stents in aneurysms**, *International journal for numerical methods in biomedical engineering*, vol. 34, no. 3, p. e2949, 2018.

[157] S. Li, J. Latt, and B. Chopard, **The application of the screen-model based approach for stents in cerebral aneurysms**, *Computers & Fluids*, vol. 172, pp. 651–660, 2018.

[158] S. Li, J. Latt, and B. Chopard, **The application of the screen-model based approach for stents in cerebral aneurysms**, *Computers & Fluids*, vol. 172, pp. 651–660, 2018.

[159] S. Li, J. Latt, and B. Chopard, **Model for pressure drop and flow deflection in the numerical simulation of stents in aneurysms**, *International Journal for Numerical Methods in Biomedical Engineering*, vol. 34, no. 3, p. e2949, Mar. 2018.

[160] X. Li, Z. Jiang, and G. G. Couples, **A Stochastic Method for Modelling the Geometry of a Single Fracture: Spatially Controlled Distributions of Aperture, Roughness and Anisotropy**, *Transport in Porous Media*, pp. 1–23, 2019.

[161] X. Li, Z. Jiang, J. Ma, and X. Wang, **A pore-skeleton-based method for calculating permeability and capillary pressure**, *Transport in Porous Media*, vol. 124, no. 3, pp. 767–786, 2018.

[162] R. Liu, Q. Yang, A. Qiao, Y. Hou, and Y. Ma, **Noninvasive numerical simulation of coronary fractional flow reserve based on lattice Boltzmann method**, *Sheng wu yi xue gong cheng xue za zhi= Journal of biomedical engineering= Shengwu yixue gongchengxue zazhi*, vol. 35, no. 3, pp. 384–389, 2018.

[163] Z. Liu and H. Wu, **Pore-scale modeling of immiscible two-phase flow in complex porous media**, *Applied Thermal Engineering*, vol. 93, pp. 1394–1402, 2016.

[164] M. Lobur and B. Dmytryshyn, **Lattice Boltzmann Method for Simulation of Microfluidic Mixing in Modified T-shape Micromixer**, *Machine Dynamics Research*, vol. 37, no. 3, pp. 5–11, 2013.

[165] A. Ludwig, A. Kharicha, C. Hölzl, J. Domitner, M. Wu, and T. Pusztai, **3D Lattice Boltzmann flow simulations through dendritic mushy zones**, *Engineering Analysis with Boundary Elements*, vol. 45, pp. 29–35, 2014.

[166] O. Malaspinas, B. Chopard, and J. Latt, **General regularized boundary condition for multi-speed lattice Boltzmann models**, *Computers & Fluids*, vol. 49, no. 1, pp. 29–35, 2011.

[167] O. Malaspinas and P. Sagaut, **Advanced large-eddy simulation for lattice Boltzmann methods: The approximate deconvolution model**, *Physics of Fluids*, vol. 23, no. 10, p. 105103, 2011.

[168] O. Malaspinas *et al.*, **A spatio-temporal model for spontaneous thrombus formation in cerebral aneurysms**, *Journal of theoretical biology*, vol. 394, pp. 68–76, 2016.

[169] B. Manhartsgruber, **The Lattice Boltzmann Method used for fluid flow modeling in hydraulic components**, in *Proceedings of 15: th Scandinavian International Conference on Fluid Power, June 7-9, 2017, Linköping, Sweden*, 2017, pp. 295–300.

[170] C. Martel and G. Iacono-Marziano, **Timescales of bubble coalescence, outgassing, and foam collapse in decompressed rhyolitic melts**, *Earth and Planetary Science Letters*, vol. 412, pp. 173–185, 2015.

[171] M. Matyka, J. Go\lembiewski, and Z. Koza, **Power-exponential velocity distributions in disordered porous media**, *Physical Review E*, vol. 93, no. 1, p. 013110, 2016.

[172] M. Matyka, Z. Koza, and \Lukasz Miros\law, **Wall orientation and shear stress in the lattice Boltzmann model**, *Computers & Fluids*, vol. 73, pp. 115–123, 2013.

[173] C. Maury, T. Bravo, D. Mazzoni, and M. Amielh, **Effect of micro-perforations on the attenuation of discrete cavity tones induced by a low-speed flow**, in *INTER-NOISE and NOISE-CON Congress and Conference Proceedings*, 2017, vol. 255, pp. 3476–3486.

[174] C. Maury, T. Bravo, D. Mazzoni, and M. Amielh, **Reducing discrete-tones generation by micro-perforating the base of an open shallow cavity under a subsonic flow**, in *Proceedings of Meetings on Acoustics 173EAA*, 2017, vol. 30, p. 030003.

[175] C. Maury, T. Bravo, and D. Mazzoni, **The use of microperforations to attenuate the cavity pressure fluctuations induced by a low-speed flow**, *Journal of Sound and Vibration*, vol. 439, pp. 1–16, 2019.

[176] T. Miki *et al.*, **Patient-specific modelling of pulmonary airflow using GPU cluster for the application in medical practice**, *Computer methods in biomechanics and biomedical engineering*, vol. 15, no. 7, pp. 771–778, 2012.

[177] T. Min, G. Weidong, P. Jingshan, and G. Meng, **Performance analysis and optimization of PalaBos on petascale Sunway BlueLight MPP Supercomputer**, *Procedia Engineering*, vol. 61, pp. 241–245, 2013.

[178] N. Mohd, M. M. Kamra, M. Sueyoshi, and C. Hu, **Lattice Boltzmann Method for Free Surface Impacting on Vertical Cylinder: A Comparison with Experimental Data**, *Evergreen*, vol. 4, no. 2–3, pp. 28–37, 2017.

[179] N. Mohd, M. M. Kamra, M. Sueyoshi, and C. Hu, **Three-dimensional Free Surface Flows Modeled by Lattice Boltzmann Method: A Comparison with Experimental Data**, *Evergreen: joint journal of Novel Carbon Resource Sciences & Green Asia Strategy*, vol. 4, no. 1, pp. 29–35, 2017.

[180] I. Mohiuddin and H. Mathkour, **Computational fluid dynamics application tools**, in *2015 World Congress on Information Technology and Computer Applications (WCITCA)*, 2015, pp. 1–5.

[181] N. H. Mokhtar, A. Abas, N. Razak, M. N. A. Hamid, and S. L. Teong, **Effect of different stent configurations using Lattice Boltzmann method and particles image velocimetry on artery bifurcation aneurysm problem**, *Journal of theoretical biology*, vol. 433, pp. 73–84, 2017.

[182] H. E. Morrison, M. Brede, G. Dehnhardt, and A. Leder, **Simulating the flow and trail following capabilities of harbour seal vibrissae with the lattice Boltzmann method**, *Journal of Computational Science*, vol. 17, pp. 394–402, 2016.

[183] H. E. Morrison and A. Leder, **Sediment transport in turbulent flows with the lattice Boltzmann method**, *Computers & Fluids*, vol. 172, pp. 340–351, 2018.

[184] L. Mountrakis, E. Lorenz, and A. G. Hoekstra, **Revisiting the use of the immersed-boundary lattice-Boltzmann method for simulations of suspended particles**, *Physical Review E*, vol. 96, no. 1, p. 013302, 2017.

[185] L. Mountrakis, E. Lorenz, O. Malaspinas, S. Alowayyed, B. Chopard, and A. G. Hoekstra, **Parallel performance of an IB-LBM suspension simulation framework**, *Journal of computational science*, vol. 9, pp. 45–50, 2015.

[186] F. Muggli, L. Chatagny, and J. Latt, **Lattice Boltzmann method for the simulation of laminar mixers**, in *14th European Conference on Mixing*, 2012.

[187] S. Mukherjee, P. Berghout, and H. E. A. Van den Akker, **A lattice boltzmann approach to surfactant-laden emulsions**, *AIChE J*, vol. 65, no. 2, pp. 811–828, Feb. 2019.

[188] S. Mukherjee, A. Zarghami, C. Haringa, K. van As, S. Kenjereš, and H. E. Van den Akker, **Simulating liquid droplets: A quantitative assessment of lattice Boltzmann and Volume of Fluid methods**, *International Journal of Heat and Fluid Flow*, vol. 70, pp. 59–78, 2018.

[189] M. R. Nalamwar, **Application of CFD software for plan**, *Research Journal of Engineering*, vol. 6, no. 3, pp. 48–51, 2017.

[190] R. Noël, F. Ge, Y. Zhang, L. Navarro, and G. Courbebaisse, **Lattice Boltzmann method for modelling of biological phenomena**, in *2017 25th European Signal Processing Conference (EUSIPCO)*, 2017, pp. 2654–2658.

[191] H. Noriega, M. Reggio, and P. Vasseur, **Natural convection of nanofluids in a square cavity heated from below**, *Computational Thermal Sciences: An International Journal*, vol. 5, no. 4, 2013.

[192] C. Obrecht, F. Kuznik, B. Tourancheau, and J.-J. Roux, **The TheLMA project: Multi-GPU implementation of the lattice Boltzmann method**, *The International Journal of High Performance Computing Applications*, vol. 25, no. 3, pp. 295–303, 2011.

[193] C. Obrecht, F. Kuznik, B. Tourancheau, and J.-J. Roux, **The TheLMA project: A thermal lattice Boltzmann solver for the GPU**, *Computers & Fluids*, vol. 54, pp. 118–126, 2012.

[194] M. Oostrom *et al.*, **Pore-scale and continuum simulations of solute transport micromodel benchmark experiments**, *Computational Geosciences*, vol. 20, no. 4, pp. 857–879, 2016.

[195] E. Oyewole, A. P. Garcia, Z. Heidari, and others, **A new method for assessment of directional permeability and conducting pore network using electric conductance in porous media**, in *SPWLA 57th Annual Logging Symposium*, 2016.

[196] E. Oyewole, M. Saneifar, Z. Heidari, and others, **Multi-Scale Characterization of Pore Structure in Carbonate Formations: Application to the SACROC Unit**, in *SPWLA 56th Annual Logging Symposium*, 2015.

[197] E. Oyewole, M. Saneifar, and Z. Heidari, **Multiscale characterization of pore structure in carbonate formations: Application to the Scurry Area Canyon Reef Operators Committee Unit**, *Interpretation*, vol. 4, no. 2, pp. SF165–SF177, 2016.

[198] Papenkort Simon and T. Voigtmann, **Channel flow of a tensorial shear-thinning Maxwell model: Lattice Boltzmann simulations**, *The Journal of chemical physics*, vol. 140, no. 16, p. 164507, 2014.

[199] S. Papenkort and T. Voigtmann, **Lattice Boltzmann simulations of a viscoelastic shear-thinning fluid**, *The Journal of chemical physics*, vol. 143, no. 4, p. 044512, 2015.

[200] S. Papenkort and T. Voigtmann, **Multi-scale lattice Boltzmann and mode-coupling theory calculations of the flow of a glass-forming liquid**, *The Journal of chemical physics*, vol. 143, no. 20, p. 204502, 2015.

[201] H. Paradis, M. Andersson, and B. Sundén, **Lattice Boltzmann Modeling of Advection-Diffusion Transport With Electrochemical Reactions in a Porous SOFC Anode Structure**, in *ASME 2013 11th International Conference on Fuel Cell Science, Engineering and Technology collocated with the ASME 2013 Heat Transfer Summer Conference and the ASME 2013 7th International Conference on Energy Sustainability*, 2013, p. V001T02A002–V001T02A002.

[202] H. Paradis, M. Andersson, and B. Sundén, **Perspectives on Lattice Boltzmann Modeling of Transport Processes With Electrochemical Reactions in SOFCs**, in *ASME 2013 International Mechanical Engineering Congress and Exposition*, 2013, p. V06BT07A014–V06BT07A014.

[203] H. Paradis, C. Grigoropoulos, and B. Sundén, **Lattice Boltzmann Method for Water-Splitting over Nanorrods with Emphasis on Reactive Mass Transport in 3D**, in *ASME 11th International Conference on Nanochannels, Microchannels, and Minichannels*, 2013.

[204] H. Paradis, C. Grigoropoulos, and B. Sundén, **Lattice Boltzmann Modeling for Analysis of Water-Splitting Over Nanorods With Emphasis on Reactive Mass Transport**, in *ASME 2013 11th International Conference on Nanochannels, Microchannels, and Minichannels*, 2013, p. V001T03A010–V001T03A010.

[205] H. Paradis, C. Grigoropoulos, and B. Sundén, **Analysis of hydrogen bubble flow between nanorods using lattice Boltzmann method**, *International Journal of Computational Methods and Experimental Measurements*, vol. 2, no. 2, pp. 145–156, 2014.

[206] H. Paradis and B. Sundén, **Evaluation of lattice Boltzmann method for reaction-diffusion process in a porous SOFC anode microstructure**, in *ASME 2012 10th International Conference on Nanochannels, Microchannels, and Minichannels collocated with the ASME 2012 Heat Transfer Summer Conference and the ASME 2012 Fluids Engineering Division Summer Meeting*, 2012, pp. 163–171.

[207] A. Parmigiani, **Lattice Boltzmann calculations of reactive multiphase flows in porous media**, 2011.

[208] A. Parmigiani, W. Degruyter, S. Leclaire, C. Huber, and O. Bachmann, **The mechanics of shallow magma reservoir outgassing**, *Geochemistry, Geophysics, Geosystems*, vol. 18, no. 8, pp. 2887–2905, 2017.

[209] A. Parmigiani, S. Faroughi, C. Huber, O. Bachmann, and Y. Su, **Bubble accumulation and its role in the evolution of magma reservoirs in the upper crust**, *Nature*, vol. 532, no. 7600, p. 492, 2016.

[210] A. Parmigiani, C. Huber, O. Bachmann, and B. Chopard, **Pore-scale mass and reactant transport in multiphase porous media flows**, *Journal of Fluid Mechanics*, vol. 686, pp. 40–76, 2011.

[211] A. Parmigiani, C. Huber, B. Chopard, J. Latt, and O. Bachmann, **Application of the multi distribution function lattice Boltzmann approach to thermal flows**, *The European Physical Journal Special Topics*, vol. 171, no. 1, pp. 37–43, 2009.

[212] A. Parmigiani, J. Latt, M. B. Begacem, and B. Chopard, **A lattice Boltzmann simulation of the Rhone river**, *International Journal of Modern Physics C*, vol. 24, no. 12, p. 1340008, 2013.

[213] A. Parmigiani, J. Latt, M. B. Begacem, and B. Chopard, **A lattice Boltzmann simulation of the Rhone river**, *International Journal of Modern Physics C*, vol. 24, no. 12, p. 1340008, 2013.

[214] A. Patronis, R. A. Richardson, S. Schmieschek, B. J. Wylie, R. W. Nash, and P. V. Coveney, **Modelling Patient-Specific Magnetic Drug Targeting within the Intracranial Vasculature**, *Frontiers in physiology*, vol. 9, p. 331, 2018.

[215] F. Pennella *et al.*, **A Virtual Test Bench to Study Transport Phenomena in 3D Porous Scaffolds Using Lattice Boltzmann Simulations**, in *ASME 2013 Summer Bioengineering Conference*, 2013, p. V01AT07A020–V01AT07A020.

[216] S. Perkins, P. Marais, J. Gain, and M. Berman, **Field D* path-finding on weighted triangulated and tetrahedral meshes**, *Autonomous agents and multi-agent systems*, vol. 26, no. 3, pp. 354–388, 2013.

[217] A. D. Pitts, A. Salama, T. Volatili, M. Giorgioni, and E. Tondi, **Analysis of Fracture Roughness Control on Permeability Using SfM and Fluid Flow Simulations: Implications for Carbonate Reservoir Characterization**, *Geofluids*, vol. 2019, 2019.

[218] E. Poizot, R. Verjus, H. Y. Nguyen, J.-R. Angilella, and Y. Méar, **Self-contamination of aquaculture cages in shallow water**, *Environmental Fluid Mechanics*, vol. 16, no. 4, pp. 793–805, 2016.

[219] C. Prohm and H. Stark, **Feedback control of inertial microfluidics using axial control forces**, *Lab on a Chip*, vol. 14, no. 12, pp. 2115–2123, 2014.

[220] S. A. Purba, A. P. Garcia, Z. Heidari, and others, **New Method for Rock Classification in Carbonate Formations Using Well-Log-Based Rock Fabric Quantification**, in *SPWLA 58th Annual Logging Symposium*, 2017.

[221] S. A. Purba, A. P. Garcia, Z. Heidari, and others, **A New Hierarchical Method for Rock Classification Using Well-Log-Based Rock Fabric Quantification**, *Petrophysics*, vol. 59, no. 05, pp. 720–734, 2018.

[222] S. Puttinger, S. P. Pirker, H. Stocker, and A. Habermann, **Modelling Dispersion of a Highly Laden Powder Jet**, in *International Conference on CFD in Oil & Gas, Metallurgical and Process Industries SINTEF/NTNU*, Trondheim Norway, 2011.

[223] K. Rahimov, A. M. AlSumaiti, H. AlMarzouqi, M. S. Jouini, and others, **Use of Local Binary Pattern in Texture Classification of Carbonate Rock Micro-CT Images**, in *SPE Kingdom of Saudi Arabia Annual Technical Symposium and Exhibition*, 2017.

[224] K. Rahimov, A. M. AlSumaiti, M. S. Jouini, and others, **Quantitative Analysis of Absolute Permeability and Porosity in Carbonate Rocks Using Digital Rock Physics**, in *22nd Formation Evaluation Symposium of Japan*, 2016.

[225] B. Rajavel and M. Prasad, **Parametric studies on acoustics of corrugated tubes using large eddy simulation (LES)**, *Noise Control Engineering Journal*, vol. 62, no. 4, pp. 218–231, 2014.

[226] M. M. Ramírez, M. F. Castez, V. M. Sánchez, and E. A. Winograd, **Methane Transport through Distorted Nanochannels: Surface Roughness Beats Tortuosity**, *ACS Applied Nano Materials*, vol. 2, no. 3, pp. 1325–1332, 2019.

[227] W. Regulski and J. Szumbarski, **Numerical simulation of confined flows past obstacles–the comparative study of Lattice Boltzmann and Spectral Element Methods**, *Archives of Mechanics*, vol. 64, no. 4, pp. 423–456, 2012.

[228] R. M. Roberts, **FY14 Report: Lattice Boltzmann Modeling of Microreactor Systems**, Los Alamos National Lab.(LANL), Los Alamos, NM (United States), 2014.

[229] S. Rohmen, A. Idiart, G. Deissmann, and D. Bosbach, **Implementation of crystallization and precipitation mechanisms in pore-scale models based on the Lattice-Boltzmann Method**, in *Deliverable nD4. 11 Draft of the 2nd Annual Project Workshop Proceeding*, p. 259.

[230] S. Rullaud, F. Blondel, and M. Cathelain, **Actuator-Line Model in a Lattice Boltzmann Framework for Wind Turbine Simulations**, in *Journal of Physics: Conference Series*, 2018, vol. 1037, p. 022023.

[231] A. Salama, S. Sun, M. F. El Amin, Y. Wang, and K. Kumar, **Flow and Transport in Porous Media: A Multiscale Focus**, *Geofluids*, vol. 2017, 2017.

[232] E. M. Salomons, W. J. Lohman, and H. Zhou, **Simulation of sound waves using the lattice Boltzmann method for fluid flow: Benchmark cases for outdoor sound propagation**, *PloS one*, vol. 11, no. 1, p. e0147206, 2016.

[233] U. R. Salomov, E. Chiavazzo, and P. Asinari, **Pore-scale modeling of fluid flow through gas diffusion and catalyst layers for high temperature proton exchange membrane (HT-PEM) fuel cells**, *Computers & Mathematics with Applications*, vol. 67, no. 2, pp. 393–411, 2014.

[234] P. Sanematsu *et al.*, **Image-based Stokes flow modeling in bulk proppant packs and propped fractures under high loading stresses**, *Journal of Petroleum Science and Engineering*, vol. 135, pp. 391–402, 2015.

[235] C. Schaaf, F. Rühle, and H. Stark, **A flowing pair of particles in inertial microfluidics**, *Soft matter*, vol. 15, no. 9, pp. 1988–1998, 2019.

[236] C. Schaaf and H. Stark, **Inertial migration and axial control of deformable capsules**, *Soft Matter*, vol. 13, no. 19, pp. 3544–3555, 2017.

[237] L. Schaefer, M. Ikeda, and J. Bao, **The Lattice Boltzmann Equation Method for Complex Flows**, in *ASME 2012 10th International Conference on Nanochannels, Microchannels, and Minichannels collocated with the ASME 2012 Heat Transfer Summer Conference and the ASME 2012 Fluids Engineering Division Summer Meeting*, 2012, pp. 687–699.

[238] J. Seelen, **A C++ 11 Implementation of a Moving Wall in the Lattice Boltzmann Method: Computational Fluid Dynamics to determine the viscosity of Molten Thorium Fuel Salt in Molten Salt Reactors**, 2016.

[239] P. Seil and S. Pirker, **Lbdemcoupling: Open-source power for fluid-particle systems**, in *International Conference on Discrete Element Methods*, 2016, pp. 679–686.

[240] P. Seil, S. Pirker, and T. Lichtenegger, **Onset of sediment transport in mono-and bidisperse beds under turbulent shear flow**, *Computational Particle Mechanics*, vol. 5, no. 2, pp. 203–212, 2018.

[241] A. G. Shet *et al.*, **Data structure and movement for lattice-based simulations**, *Physical Review E*, vol. 88, no. 1, p. 013314, 2013.

[242] W. Sobieski, **Numerical investigations of tortuosity in randomly generated pore structures**, *Mathematics and Computers in Simulation*, 2019.

[243] W. Sobieski, M. Matyka, J. Go\lembiewski, and S. Lipiński, **The Path Tracking Method as an alternative for tortuosity determination in granular beds**, *Granular Matter*, vol. 20, no. 4, p. 72, 2018.

[244] J. Soete *et al.*, **Lattice Boltzmann simulations of fluid flow in continental carbonate reservoir rocks and in upscaled rock models generated with multiple-point geostatistics**, *Geofluids*, vol. 2017, 2017.

[245] K. Sott *et al.*, **μPIV methodology using model systems for flow studies in heterogeneous biopolymer gel microstructures**, *Journal of colloid and interface science*, vol. 398, pp. 262–269, 2013.

[246] B. Stahl, B. Chopard, and J. Latt, **Measurements of wall shear stress with the lattice Boltzmann method and staircase approximation of boundaries**, *Computers & Fluids*, vol. 39, no. 9, pp. 1625–1633, 2010.

[247] M. Steiner *et al.*, **Nanowetting microscopy probes liquid-solid interaction at the nanoscale**, in *SPE Asia Pacific Enhanced Oil Recovery Conference*, 2015.

[248] H. Sun, S. Vega, and G. Tao, **Analysis of heterogeneity and permeability anisotropy in carbonate rock samples using digital rock physics**, *Journal of Petroleum Science and Engineering*, vol. 156, pp. 419–429, 2017.

[249] A. Takbiri-Borujeni, M. Tyagi, M. Kazemi, and others, **Impact of the loading stress variations on transport properties of granular packs**, in *48th US Rock Mechanics/Geomechanics Symposium*, 2014.

[250] J. Tan, T. Sinno, and S. Diamond, **Coupling molecular dynamics with lattice Boltzmann method based on the immersed boundary method**, in *APS Division of Fluid Dynamics Meeting Abstracts*, 2017.

[251] J. Tan, T. R. Sinno, and S. L. Diamond, **A parallel fluid–solid coupling model using lammps and palabos based on the immersed boundary method**, *Journal of computational science*, vol. 25, pp. 89–100, 2018.

[252] J. S. Y. Tan, G. Závodszky, and P. M. Sloot, **Understanding Malaria Induced Red Blood Cell Deformation Using Data-Driven Lattice Boltzmann Simulations**, in *International Conference on Computational Science*, 2018, pp. 392–403.

[253] M. Tembely, A. M. AlSumaiti, K. Rahimov, and M. S. Jouini, **Numerical Simulation of Non-Newtonian Fluid Flow through a Rock Scanned with High Resolution X-ray Micro-CT**, in *Proceedings of the World Congress on Engineering*, 2017, vol. 2.

[254] M. Tembely, A. M. AlSumaiti, K. Rahimov, and M. S. Jouini, **Pore-Scale Modeling of Non-Newtonian Fluid Flow Through Micro-CT Images of Rocks**, in *The World Congress on Engineering*, 2017, pp. 363–375.

[255] M. Tembely, A. M. AlSumaiti, M. S. Jouini, and K. Rahimov, **The Effect of Heat Transfer and Polymer Concentration on Non-Newtonian Fluid from Pore-Scale Simulation of Rock X-ray Micro-CT**, *Polymers*, vol. 9, no. 10, 2017.

[256] A. Temitope and I. Gupta, **A review of reactive transport modeling in wellbore integrity problems**, *Journal of Petroleum Science and Engineering*, 2019.

[257] Y. Thorimbert, J. Latt, L. Cappietti, and B. Chopard, **Virtual wave flume and Oscillating Water Column modeled by lattice Boltzmann method and comparison with experimental data**, *International Journal of Marine Energy*, vol. 14, pp. 41–51, 2016.

[258] Y. Thorimbert, J. Latt, L. Cappietti, and B. Chopard, **Virtual wave flume and Oscillating Water Column modeled by lattice Boltzmann method and comparison with experimental data**, *International Journal of Marine Energy*, vol. 14, pp. 41–51, 2016.

[259] Y. Thorimbert, F. Marson, A. Parmigiani, B. Chopard, and J. Latt, **Lattice Boltzmann simulation of two-phase magmatic flows using Immersed Boundary method**, 2017.

[260] Y. Thorimbert, F. Marson, A. Parmigiani, B. Chopard, and J. Lätt, **Lattice Boltzmann simulation of dense rigid spherical particle suspensions using immersed boundary method**, *Computers & Fluids*, vol. 166, pp. 286–294, 2018.

[261] Y. Thorimbert, F. Marson, A. Parmigiani, B. Chopard, and J. Latt, **Lattice Boltzmann simulation of dense rigid spherical particle suspensions using immersed boundary method**, *Computers & Fluids*, vol. 166, pp. 286–294, 2018.

[262] M. Tian, W. Gu, J. Pan, and M. Guo, **Performance analysis and optimization of palabos on petascale sunway BlueLight MPP supercomputer**, in *International Conference on Parallel Computing in Fluid Dynamics*, 2013, pp. 311–320.

[263] A. Tiftikçi and C. Kocar, **Lattice Boltzmann simulation of flow across a staggered tube bundle array**, *Nuclear Engineering and Design*, vol. 300, pp. 135–148, 2016.

[264] A. Tiftikci and C. Kocar, **Investigation of turbulence models for a fully-periodic LWR unit-cell in lattice-Boltzmann framework**, *Progress in Nuclear Energy*, vol. 104, pp. 160–171, 2018.

[265] A. Tiftikci and C. Kocar, **Turbulent Flow Simulations Of Wire-wrapped Fuel Pin Bundle Of Sodium Cooled Fast Reactor In Lattice-Boltzmann Framework**, in *The 24th International Conference Nuclear Energy for New Europe, NENE-2015*, 2015, pp. 14–17.

[266] A. Tiftikci and C. Kocar, **Investigation of Thermal Turbulent Flow Characteristics of Wire-wrapped Fuel Pin Bundle of Sodium Cooled Fast Reactor in Lattice-Boltzmann Framework**, in *25th International Conference Nuclear Energy for New Europe (NENE)*, 2016.

[267] A. Tokan-Lawal, C. Landry, M. Prodanovic, and P. Eichhubl, **Relating tortuosity and permeability in the Niobrara Formation**, in *AGU Fall Meeting Abstracts*, 2013.

[268] A. Tokan-Lawal, C. J. Landry, P. Eichhubl, and M. Prodanovic, **Understanding tortuosity and permeability variations in naturally fractured reservoirs: Niobrara Formation**, in *Unconventional Resources Technology Conference, Denver, Colorado, 25-27 August 2014*, 2014, pp. 369–381.

[269] A. Tokan-Lawal, M. Prodanovic, C. Landry, and P. Eichhubl, **Understanding Flow in Unconventional Reservoirs Fractures: Influence of Compaction and Cementation**, in *AGU Fall Meeting Abstracts*, 2014.

[270] A. Tokan-Lawal, M. Prodanović, and P. Eichhubl, **Image-based modeling of flow in natural partially cemented fractures**, in *Unconventional Resources Technology Conference*, 2013, pp. 2692–2701.

[271] A. Tokan-Lawal, M. Prodanović, and P. Eichhubl, **Investigating flow properties of partially cemented fractures in Travis Peak Formation using image-based pore-scale modeling**, *Journal of Geophysical Research: Solid Earth*, vol. 120, no. 8, pp. 5453–5466, 2015.

[272] A. Tokan-Lawal, M. Prodanović, C. J. Landry, and P. Eichhubl, **Influence of numerical cementation on multiphase displacement in rough fractures**, *Transport in Porous Media*, vol. 116, no. 1, pp. 275–293, 2017.

[273] P. Trinchero *et al.*, **a Streamtube Approach for the Simulation of the Hydrochemical Evolution at the Olkiluoto Site**, in *AGU Fall Meeting Abstracts*, 2011.

[274] H. E. Van den Akker, **Lattice Boltzmann simulations for multi-scale chemical engineering**, *Current Opinion in Chemical Engineering*, vol. 21, pp. 67–75, 2018.

[275] J. T. Van Lew, A. Ying, and M. Abdou, **Coupling discrete element models of ceramic breeder pebble beds to thermofluid models of helium purge gas using volume-averaged Navier-Stokes and the Lattice-Boltzmann method**, *Fusion Science and Technology*, vol. 68, no. 2, pp. 288–294, 2015.

[276] E. Vergnault and P. Sagaut, **Application of Lattice Boltzmann Method to sensitivity analysis via complex differentiation**, *Journal of Computational Physics*, vol. 230, no. 13, pp. 5417–5429, 2011.

[277] E. Vergnault and P. S. Sagaut, **An adjoint-based lattice Boltzmann method for noise control problems**, *Journal of Computational Physics*, vol. 276, pp. 39–61, 2014.

[278] E. Vergnault, O. Malaspinas, and P. Sagaut, **Noise source identification with the lattice Boltzmann method**, *The Journal of the Acoustical Society of America*, vol. 133, no. 3, pp. 1293–1305, 2013.

[279] J.-L. Vigneresse, **Textures and melt-crystal-gas interactions in granites**, *Geoscience Frontiers*, vol. 6, no. 5, pp. 635–663, 2015.

[280] J.-L. Vigneresse, L. Truche, and A. Richard, **How do metals escape from magmas to form porphyry-type ore deposits?**, *Ore Geology Reviews*, vol. 105, pp. 310–336, 2019.

[281] A. Volpe, P. Paiè, A. Ancona, R. Osellame, P. Lugarà, and G. Pascazio, **A computational approach to the characterization of a microfluidic device for continuous size-based inertial sorting**, *Journal of Physics D: Applied Physics*, vol. 50, no. 25, p. 255601, 2017.

[282] J. Wang, Y. Ju, Y. Huang, J. Zheng, and Z. Zheng, **Study of the influence of porous structure on the permeability of rock using Lattice Boltzmann method**, *Procedia engineering*, vol. 102, pp. 1835–1841, 2015.

[283] K. Wang and W. Sun, **An updated Lagrangian LBM–DEM–FEM coupling model for dual-permeability fissured porous media with embedded discontinuities**, *Computer Methods in Applied Mechanics and Engineering*, vol. 344, pp. 276–305, 2019.

[284] A. Warning, A. K. Datta, and J. A. Bartz, **Mechanistic understanding of temperature-driven water and bacterial infiltration during hydrocooling of fresh produce**, *Postharvest Biology and Technology*, vol. 118, pp. 159–174, 2016.

[285] A. Warning, P. Verboven, B. Nicolaï, G. van Dalen, and A. K. Datta, **Computation of mass transport properties of apple and rice from X-ray microtomography images**, *Innovative Food Science & Emerging Technologies*, vol. 24, pp. 14–27, 2014.

[286] K. Watanabe, H. Anzai, and M. Ohta, **Flow Simulations to Establish the Relationship Between the Inflow Zone in the Neck of a Cerebral Aneurysm and the Positions of Struts**, in *ASME 2016 International Mechanical Engineering Congress and Exposition*, 2016, p. V003T04A015–V003T04A015.

[287] Z. Wei, W. Yong, and Q. Yue-Hong, **Stability analysis for flow past a cylinder via lattice Boltzmann method and dynamic mode decomposition**, *Chinese Physics B*, vol. 24, no. 6, p. 064701, 2015.

[288] A. T. White and C. K. Chong, **Rotational invariance in the three-dimensional lattice Boltzmann method is dependent on the choice of lattice**, *Journal of Computational Physics*, vol. 230, no. 16, pp. 6367–6378, 2011.

[289] C. Winardhi, F. Maulana, and F. Latief, **Permeability estimation of porous rock by means of fluid flow simulation and digital image analysis**, in *IOP Conference Series: Earth and Environmental Science*, 2016, vol. 29, p. 012005.

[290] G. Wissocq, N. Gourdain, O. Malaspinas, and A. Eyssartier, **Regularized characteristic boundary conditions for the Lattice-Boltzmann methods at high Reynolds number flows**, *Journal of Computational Physics*, vol. 331, pp. 1–18, 2017.

[291] M. Wittmann, V. Haag, T. Zeiser, H. Köstler, and G. Wellein, **Lattice Boltzmann benchmark kernels as a testbed for performance analysis**, *Computers & Fluids*, vol. 172, pp. 582–592, 2018.

[292] O. F. Wopara and S. E. Iyuke, **Fluid transport properties and characterization of wettability trends of agbada sandstone petroleum reservoir**, *Petroleum & Coal*, vol. 59, no. 5, 2017.

[293] H. Xu, O. Malaspinas, and P. Sagaut, **Sensitivity analysis and determination of free relaxation parameters for the weakly-compressible MRT–LBM schemes**, *Journal of Computational Physics*, vol. 231, no. 21, pp. 7335–7367, 2012.

[294] H. Xu and P. Sagaut, **Analysis of the absorbing layers for the weakly-compressible lattice Boltzmann methods**, *Journal of Computational Physics*, vol. 245, pp. 14–42, 2013.

[295] R. Xu and M. Prodanović, **Effect of pore geometry on nitrogen sorption isotherms interpretation: A pore network modeling study**, *Fuel*, vol. 225, pp. 243–255, 2018.

[296] P. Yin and G.-F. Zhao, **Numerical study of two-phase fluid distributions in fractured porous media**, *International Journal for Numerical and Analytical Methods in Geomechanics*, vol. 39, no. 11, pp. 1188–1211, 2015.

[297] P. Yin and G.-F. Zhao, **Numerical simulation of fluid flow through deformable natural fracture network**, *Geomechanics and Geophysics for Geo-Energy and Geo-Resources*, vol. 2, no. 4, pp. 343–363, 2016.

[298] H. Yoon and T. A. Dewers, **Nanopore structures, statistically representative elementary volumes, and transport properties of chalk**, *Geophysical Research Letters*, vol. 40, no. 16, pp. 4294–4298, 2013.

[299] H. Yoon, K. A. Klise, D. M. Moriarty, V. A. Torrealba, and Z. T. Karpyn, **Digital image analysis of stress-dependent granular compaction and its impact on multiphase fluid distributions.**, Sandia National Lab.(SNL-NM), Albuquerque, NM (United States), 2015.

[300] H. Yoon, J. Major, T. Dewers, and P. Eichhubl, **Application of a pore-scale reactive transport model to a natural analog for reaction-induced pore alterations**, *Journal of Petroleum Science and Engineering*, vol. 155, pp. 11–20, 2017.

[301] X. Yu, J. Tan, and S. Diamond, **Hemodynamic force triggers rapid NETosis within sterile thrombotic occlusions**, *Journal of Thrombosis and Haemostasis*, vol. 16, no. 2, pp. 316–329, 2018.

[302] S. Zabelok, R. Arslanbekov, and V. Kolobov, **Adaptive Kinetic-fluid Solvers for Heterogeneous Computing Architectures**, *Journal of Computational Physics*, vol. 303, pp. 455–469, 2015.

[303] M. Zambrano *et al.*, **Fluid flow simulation and permeability computation in deformed porous carbonate grainstones**, *Advances in water resources*, vol. 115, pp. 95–111, 2018.

[304] G. Závodszky, **Hemodynamic investigation of arteries using the lattice Boltzmann method**, 2015.

[305] G. Závodszky and G. Paál, **Validation of a lattice Boltzmann method implementation for a 3D transient fluid flow in an intracranial aneurysm geometry**, *International Journal of Heat and Fluid Flow*, vol. 44, pp. 276–283, 2013.

[306] G. Závodszky, B. van Rooij, V. Azizi, and A. Hoekstra, **Cellular level in-silico modeling of blood rheology with an improved material model for red blood cells**, *Frontiers in physiology*, vol. 8, p. 563, 2017.

[307] G. Zavodszky, B. van Rooij, V. Azizi, S. Alowayyed, and A. Hoekstra, **Hemocell: a high-performance microscopic cellular library**, *Procedia Computer Science*, vol. 108, pp. 159–165, 2017.

[308] G. Závodszky, B. van Rooij, B. Czaja, V. Azizi, D. de Kanter, and A. G. Hoekstra, **Red blood cell and platelet diffusivity and margination in the presence of cross-stream gradients in blood flows**, *Physics of Fluids*, vol. 31, no. 3, p. 031903, 2019.

[309] G. Zhang, P. G. Ranjith, M. S. A. Perera, A. Haque, X. Choi, and K. S. M. Sampath, **Characterization of coal porosity and permeability evolution by demineralisation using image processing techniques: A micro-computed tomography study.**, *Journal of Natural Gas Science and Engineering*, vol. 56, pp. 384–396, 2018.

[310] M. Zhang, H. Anzai, B. Chopard, and M. Ohta, **Manufacture-Oriented Design Optimisation of a Flow Diverter Stent Using Lattice Boltzmann Method and Simulated Annealing**, in *11th World Congress on Structural and Multidisciplinary Optimization*, 2015.

[311] M. Zhang, H. Anzai, B. Chopard, and M. Ohta, **Towards the patient-specific design of flow diverters made from helix-like wires: an optimization study**, *Biomedical engineering online*, vol. 15, no. 2, p. 159, 2016.

[312] Y. Zhang, Y. Wang, E. Kao, L. Flórez-Valencia, and G. Courbebaisse, **Towards optimal flow diverter porosity for the treatment of intracranial aneurysm**, *Journal of biomechanics*, vol. 82, pp. 20–27, 2019.

[313] S. Zimny *et al.*, **A multiscale approach for the coupled simulation of blood flow and thrombus formation in intracranial aneurysms**, *Procedia Computer Science*, vol. 18, pp. 1006–1015, 2013.

[314] P. S. Zun, T. Anikina, A. Svitenkov, and A. G. Hoekstra, **A comparison of fully-coupled 3D in-stent restenosis simulations to in-vivo data**, *Frontiers in physiology*, vol. 8, p. 284, 2017.

[315] **Modeling of mass and charge transport in a solid oxide fuel cell anode structure by a 3D lattice Boltzmann approach.**, *Heat and Mass Transfer*, vol. 52, no. 8, pp. 1529–1540, 2016.